Genomic Microorganism Research

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Bacteroides Web Page
Background and current research information about Bacteroides fragilis and other closely related bacteria.

 
Leptospira Molecular Genetics Server
Database of genetic maps and sequence analysis.

 
Influenza Sequence Database
A curated database of nucleotide and amino acid sequences. It is intended to provide the research community with easy sequence deposit and retrieval capabilities, together with tools tailored, in particular, to the analysis of hemagglutinin and .

 
Fungal Genome Resource
Physical maps, sequence data, white papers, project information and related links.

 
The Mycoplasma pneumoniae Genome Project
Abstract, introduction, methods, results, and statistics on the genome project.

 
IS Finder
This database provides a list of insertion sequences isolated from eubacteria and archae. It is organised into individual files containing their general features (name, size, origin, family) as well as their DNA and potential protein sequences.

 
STC Production on Human BACs
Production of STCs for the BACs being used in human genome sequencing. This publicly available resource now has a crucial role in the current drive to rapidly generate the draft sequence of the human genome.

 
The Borrelia burgdorferi Genome Database, TIGR
Offers access to the latest versions of the sequence data and related annotation.

 
International Collaborative Project to Sequence the Genome of Pseudomonas aeruginosa
P. aeruginosa genome sequencing project Web site at the Centre for Molecular and Cellular Biology, University of Queensland.

 
Richard Herrmann's Group
Information on research project, group, and publications. Home page of the Mycoplasma pneumoniae Genome Project.

 
Methanobacterium thermoautotrophicum Database
Hosted by The Ohio State University Department of Microbiology.

 
The Enhanced Microbial Genomes Library
This page allows to access EMGLib, a database devoted to the completely sequenced bacterial genomes and the yeast genome.

 
MICADO
Explore the database of genomes and metabolic pathways of microorganisms.

 
Elitra Pharmaceuticals
Develops antimicrobial drugs through targeting essential genes and gene products of pathogenic organisms.

 
Neisseria gonorrhoeae Genome Sequencing
Project progress, sequence and annotation information.

 
Filarial Genome Network
An international initiative to coordinate genome research on the filarial nematode parasites of humans.

 
Malaria Database
Resource for scientists working in malaria research with information ranging from sequences to research jobs.

 
Fungal Genome Databases
This is a collection of fungal genome databases and associated data.

 
Campylobacter jejuni
The complete sequence and annotation of C. jejuni.

 
Caulobacter crescentus
Overview, cell cycle and genomic map.

 
Parasite Genomes Web Site
Site to provide information on advances in the various parasite genome projects and links to the parasite genome 'networks'.

 
Dictystelium discoideum cDNA Project
cDNA project to structurally and functionally analyze whole expressed genes in developing Dictyostelium discoideum cells.

 
Organellar Genome Databases
Collection of organelle genome databases.

 
INRA
Sinorhizobium meliloti strain 1021 genome sequencing projects, Ralstonia solanacearum strain GMI1000 genome sequencing project.

 
Pseudomonas Genome Project
Project information, database search, related links and sequence data.

 
Parasite Genome
Search a range of parasite specific nucleotide sequence databases with your own sequence. The databases are updated on a monthly basis.

 
Prokaryotic Genome Databases
This is a collection of prokaryotic genome databases.

 
SEEBUGS Microbial Genome Analysis
Set of tools to allow analysis of genomes, primarily microbial. From this page you can easily get to each of the available forms using the links in the table.

 
Subviral RNA Database
These articles report a proposed new nomenclature and discuss various phylogenetic and structural considerations. We ask authors using this data bank to cite these original references.

 
The Neisseria meningitidis Genome Database
This page offers access to the latest versions of the sequence data and related annotation.

 
The Organelle Genome Database
A taxonomically broad organelle genome database that organizes and integrates diverse data related to organelles.

 
The Deinococcus radiodurans Genome Database
This page offers access to the latest versions of the sequence data and related annotation.

 
Bacterial Genomes Server
From the MRC Laboratory of Molecular Biology.

 
Homologous Bacterial Genes Database
A database system that contains all the protein sequences of bacteria organized into families. It allows one to select sets of homologous genes from bacterial species and to visualize multiple alignments and phylogenetic trees.

 
Picornavirus Home Page
Genomic project and database resources.

 
CyanoBase
The genome database for Synechocystis species.

 
Microbial Genome Database
A database for comparative analysis of completely sequenced microbial genomes, the number of which is now growing rapidly. The aim of MBGD is to facilitate comparative genomics from various points of view such as orthologue identification, paral.

 
Forsburg Lab
The focus of research is understanding the control of DNA replication and the regulation of the cell cycle in a model genetic system: the fission yeast Schizosaccharomyces pombe.

 
CBS Databases
Mission is to contribute to the knowledge of fungal biodiversity through the study of taxonomic and phylogenetic relationships, especially of filamentous fungi and yeasts.

 
University of Minnesota Center for Microbial Genomics
CMG has been funded at the University of Minnesota to promote studies on genome analysis of microorganisms.

 
Resources Centre Infobiogen
Genomics project listing, research resources and databases.

 
Pyrococcus abyssi
Genome project of Pyrococcus abyssi, a hyperthermophilic organism.

 
Neisseria meningitidis
Genomic project information from the Sanger Center.

 
Genomes
Provides access to current and completed microbial genome projects.

 
Malaria Parasite Metabolic Pathways
The metabolic pathways of Plasmodium were extracted from the Kyoto University Encyclopedia of Genes and Genomes site (KEGG) that provides the common consent views of biochemistry that are not specific to particular organisms.

 
Parasite Databases of Clustered ESTs
Provide useful information and analyses to the scientific community without curating the results in any way. A brief tutorial from a poster presentation on the Toxoplasma gondii database can be viewed.

 
Parasite Genome Databases
Genomic database and related resources.

 
Molecular Evolution & Organelle Genomics
Organelle sequencing data from multiple sources of projects.

 
The Treponema pallidum Genome Database
Access to the latest versions of the sequence data and related annotation.

 
The Borrelia burgdorferi Genome Database
Latest versions of the sequence data and related annotation.

 
TubercuList
This server is constructed around a database dedicated to the analysis of the genomes of the tubercle bacilli.

 
STD Sequence Database
These specialized databases are an expansion of the human papillomavirus project funded by the Sexually Transmitted Diseases Branch of the Division of Microbiology and Infectious Diseases, National Institute of Allergy and Infectious Diseases, N.

 
The Chlamydia pneumoniae Genome Database
Genome database from TIGR.

 
Index Virum
The universal virus database, from the Research School of Biological Sciences, and the Australian National University.

 
Beowulf Genomics
The initiative was established to ensure that the genome sequences of microbial pathogens were available to as wide a range of researchers as is possible.

 
Genomic Information for Dictyostelium discoideum
Provides genomic information about the soil amoeba Dictyostelium discoideum and access to DictyDB, the ACeDB database for Dictyostelium discoideum, developed at UCSD as part of the Developmental Gene Program (DGP).

 
Cyanosite
Cyanobacterial bibliography on-line.

 
A Universal Virus Database
The goal of the ICTVdB is to describe all viruses of animals (vertebrates, invertebrates, protozoa), plants (higher plants and algae), bacteria, fungi, and archaea from the family level down to strains and isolates.

 
Xylella fastidiosa Genome Project
Project information including the organization, funding and participants, and genomic data.

 
Ureaplasma urealyticum
Complete genomic sequence data.

 
Fungal Cosmid and cDNA Sequencing
Project progress information as well as sequence database.

 
The Schizosaccharomyces pombe Genome Project
Project information and genomic database.

 
Helicobacter pylori
This page offers access to the latest versions of the sequence data and related annotation. An expanded, hypertext-linked version of the gene identification table from the article is also available.

 
the Leptospira Molecular Genetics Server
Genetics server for Leptomspira genomic information.

 
German Collection of Microorganisms and Cell Cultures
An independent, non-profit organization dedicated to the acquisition, characterization and identification, preservation and distribution of Bacteria, Archaea, fungi, plasmids, phages, human and animal cell lines, plant cell cultures and plant vi.

 
Human Papillomaviruses Database
Collects, curates, analyzes, and publishes genetic sequences of papillomaviruses and related cellular proteins.

 
Complete Microbial Genomes
Microbial genome database, from InfoBioGen.

 
Mycobacterial DataBase
A database with information on mycobacteria, relevant to the study of the organisms and diseases caused by them. The focus has been on the molecular biology of mycobacteria: physical mapping, nucleotide sequences, antigens, antibodies.

 
Pyrococcus horikoshii OT3 Database
From the National Institute of Technology and Evaluation Biotechnology Center.

 
Bacterial Polysaccharide Gene Database
Database for information on cluster of genes or a particular gene.

 
Streptococcus pyogenes Genome Sequencing
Project information, annotation notes, data and progress information.

 
The Chlamydia trachomatis Genome Database, TIGR
Offers access to the latest versions of the sequence data and related annotation.

 
MAGPIE
List of genome projects, links to databases, and view of completed genomes.

 
Chlamydia pneumoniae J138, Whole genome sequencing , Kyushu University
Genome sequence, project teams and publications.

 
The Helicobacter pylori Genome Database
Access to the latest versions of the sequence data and related annotation.

 
The Haemophilus influenzae Rd Genome Database
This page offers access to the latest versions of the sequence data and related annotation.

 
TIGR Microbial Database
Listing of published microbial genomes and chromosomes and those in progress.

 
The Vibrio cholerae Genome Database
Access to the latest versions of the sequence data and related annotation.

 
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