| Multiple Sequence Alignment Tools Pharmaceuticals_and_biotechnology > Biotechnology > Multiple Sequence Alignment Tools |  |
An alignment program that relies on comparison of whole segments of the sequences instead of comparison of single residues. Pairwise as well as multiple alignments are constructed from gapfree pairs of equal length segments.
Sequence logo generation form.
Database searching, browsing and analysis tools.
Profile hidden Markov models (profile HMMs) can be used to do sensitive database searching using statistical descriptions of a sequence family's consensus.
This form will perform a multiple sequence alignment using the algorithm. From Washington University.
A graphical program for visualizing local alignments between two sequences (protein or nucleic acids).
Full featured multiple sequence alignment editor, analyzer and shading utility for Windows.
Web page for multiple protein sequence alignment.
List of searchable databases from University of Virginia.
A color interactive editor for multiple alignments. The program allows visualization and manipulation of both protein and DNA sequences.
This server allows you to run AMAS on your own multiple sequence alignment.
A linear hidden Markov model, a sequence of nodes, each corresponding to a column in a multiple alignment.
A compendium of sequence alignments.
Method for multiple alignment, constructs pairwise and multiple alignments by comparing whole segments of the sequences.
Multiple sequence alignment with confidence estimates.
a graphical multiple sequence alignment editor, able to read various alignment formats (MSF, CLUSTAL, FASTA, PHYLIP, MASE).
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